Scale-dependent co-occurrence patterns of closely related
genotypes in a lichen species complex
| 1 | Department of Botany, Kasetsart University, Bangkok, Thailand |
| 2 | Science and Education, Field Museum, Chicago, IL USA |
| 3 | Department of Ecology and Evolutionary Biology, University of Colorado,
Boulder, CO, USA |
| 4 | Institute of Biology, Division of Plant Sciences, NAWI Graz, University
of Graz, Austria |
| 5 | Botanic Garden and Botanical Museum, Freie Universität Berlin,
Berlin, Germany |
Publication date: 2019-12-16
Plant and Fungal Systematics 2019; 64(2): 163–172
KEYWORDS
ABSTRACT
The ‘competition-relatedness’ hypothesis postulates that co-occurring taxa should
be more distantly related, because of lower competition. This hypothesis has been criticized
for its dependence on untested assumptions and its exclusion of other assembly forces
beyond competition and habitat filtering to explain the co-existence of closely related
taxa. Here we analyzed the patterns of co-occurring individuals of lichenized fungi in the
Graphis scripta complex, a monophyletic group of species occurring in temperate forests
throughout the Northern Hemisphere. We generated sequences for three nuclear ribosomal
and protein markers (nuLSU, RPB2, EF-1) and combined them with previously generated
sequences to reconstruct an updated phylogeny for the complex. The resulting phylogeny was
used to determine the patterns of co-occurrences at regional and at sample (tree) scales by
calculating standard effect size of mean pairwise distance (SES.MPD) among co-occurring
samples to determine whether they were more clustered than expected from chance. The
resulting phylogeny revealed multiple distinct lineages, suggesting the presence of several
phylogenetic species in this complex. At the regional and local (site) levels, SES.MPD
exhibited significant clustering for five out of six regions. The sample (tree) scale SES.
MPD values also suggested some clustering but the corresponding metrics did not deviate
significantly from the null expectation. The differences in the SES.MPD values and their
significance indicated that habitat filtering and/or local diversification may be operating
at the regional level, while the local assemblies on each tree are interpreted as being the
result of local competition or random colonization.
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